Variant report

Variant	rs742825
Chromosome Location	chr20:11411530-11411531
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10460628	0.81[EUR][1000 genomes]
rs11906138	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12624468	0.97[ASN][1000 genomes]
rs12625750	0.94[ASN][1000 genomes]
rs2207545	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6131210	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6131212	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6131213	0.82[AFR][1000 genomes]
rs6134257	0.81[EUR][1000 genomes]
rs68160848	0.83[AFR][1000 genomes]
rs7262680	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73081803	0.97[ASN][1000 genomes]
rs73081847	0.97[ASN][1000 genomes]
rs73247751	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065969	chr20:10850562-11464172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv544181	chr20:10850562-11464172	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432099	chr20:11371093-11476900	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1058734	chr20:11389232-11479953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv522929	chr20:11411026-11516418	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:11408000-11415000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr20:11410200-11411600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr20:11410200-11413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:11410200-11413000	Weak transcription	HMEC	breast
5	chr20:11410200-11413000	Weak transcription	NHEK	skin
6	chr20:11410400-11413000	Weak transcription	A549	lung
7	chr20:11410600-11411800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr20:11410600-11413000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:11410800-11411600	Enhancers	Fetal Kidney	kidney
10	chr20:11410800-11412600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr20:11411000-11412000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr20:11411400-11411800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr20:11411400-11412000	Weak transcription	Osteobl	bone
14	chr20:11411400-11414200	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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