Variant report

Variant	rs73247858
Chromosome Location	chr8:60608647-60608648
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10088614	1.00[AMR][1000 genomes]
rs10092492	1.00[AMR][1000 genomes]
rs16924957	1.00[AMR][1000 genomes]
rs28558380	1.00[AMR][1000 genomes]
rs28570386	1.00[AMR][1000 genomes]
rs73245923	1.00[AMR][1000 genomes]
rs73245928	1.00[AMR][1000 genomes]
rs73245969	1.00[AMR][1000 genomes]
rs73247842	1.00[AMR][1000 genomes]
rs73247844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680628	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60606200-60610000	Enhancers	Fetal Stomach	stomach
2	chr8:60606400-60608800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:60606600-60609000	Enhancers	Colon Smooth Muscle	Colon
4	chr8:60606600-60611000	Enhancers	Hela-S3	cervix
5	chr8:60606800-60610800	Enhancers	NHDF-Ad	bronchial
6	chr8:60607200-60609200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:60607800-60609400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr8:60607800-60610200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:60607800-60610400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:60608000-60609000	Weak transcription	NHEK	skin
11	chr8:60608000-60609000	Weak transcription	NHLF	lung
12	chr8:60608200-60609200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:60608200-60609400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr8:60608400-60608800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:60608400-60609400	Weak transcription	NH-A	brain
16	chr8:60608600-60609000	Weak transcription	Osteobl	bone
17	chr8:60608600-60609200	Weak transcription	HMEC	breast
18	chr8:60608600-60609400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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