Variant report

Variant	rs10088614
Chromosome Location	chr8:60387800-60387801
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10089051	1.00[AMR][1000 genomes]
rs10089372	0.82[AFR][1000 genomes]
rs10092492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10097600	1.00[AMR][1000 genomes]
rs10102220	1.00[AMR][1000 genomes]
rs10111742	1.00[AMR][1000 genomes]
rs13439181	0.82[AFR][1000 genomes]
rs16924957	1.00[AMR][1000 genomes]
rs28371061	1.00[AMR][1000 genomes]
rs28508332	0.82[AFR][1000 genomes]
rs28546103	1.00[AMR][1000 genomes]
rs28558380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28570386	1.00[AMR][1000 genomes]
rs28575644	1.00[AMR][1000 genomes]
rs28691593	1.00[AMR][1000 genomes]
rs6998436	1.00[AMR][1000 genomes]
rs73245923	1.00[AMR][1000 genomes]
rs73245928	1.00[AMR][1000 genomes]
rs73245969	1.00[AMR][1000 genomes]
rs73247842	1.00[AMR][1000 genomes]
rs73247844	1.00[AMR][1000 genomes]
rs73247858	1.00[AMR][1000 genomes]
rs73680628	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60376000-60389600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:60386400-60388000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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