Variant report

Variant	rs10089051
Chromosome Location	chr8:60333623-60333624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10088614	1.00[AMR][1000 genomes]
rs10092492	1.00[AMR][1000 genomes]
rs10097600	1.00[AMR][1000 genomes]
rs10102220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10111742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924957	1.00[AMR][1000 genomes]
rs28371061	1.00[AMR][1000 genomes]
rs28546103	1.00[AMR][1000 genomes]
rs28558380	1.00[AMR][1000 genomes]
rs28570386	1.00[AMR][1000 genomes]
rs28575644	1.00[AMR][1000 genomes]
rs28691593	1.00[AMR][1000 genomes]
rs6998436	1.00[AMR][1000 genomes]
rs73245923	1.00[AMR][1000 genomes]
rs73245928	1.00[AMR][1000 genomes]
rs73245969	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv890941	chr8:60309850-60381595	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60333200-60333800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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