Variant report

Variant	rs28546103
Chromosome Location	chr8:60187570-60187571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10088614	1.00[AMR][1000 genomes]
rs10089051	1.00[AMR][1000 genomes]
rs10097600	1.00[AMR][1000 genomes]
rs10102220	1.00[AMR][1000 genomes]
rs10111742	1.00[AMR][1000 genomes]
rs10112346	0.88[AFR][1000 genomes]
rs28371061	1.00[AMR][1000 genomes]
rs28558380	1.00[AMR][1000 genomes]
rs28575644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691593	1.00[AMR][1000 genomes]
rs6998436	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831328	chr8:60062971-60288276	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv831329	chr8:60162977-60356031	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60177600-60194800	Weak transcription	Fetal Brain Male	brain
2	chr8:60186200-60188000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr8:60186200-60188000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:60186400-60188200	Enhancers	NHEK	skin
5	chr8:60186800-60189000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:60187000-60187800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr8:60187000-60189000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:60187200-60188400	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:60187400-60187800	Enhancers	HMEC	breast
10	chr8:60187400-60188000	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr8:60187400-60188000	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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