Variant report

Variant	rs7325026
Chromosome Location	chr13:49538512-49538513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FNDC3A-2	chr13:49538238-49538736	NONHSAT033726

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1928109	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1928110	0.83[EUR][1000 genomes]
rs1937180	0.85[EUR][1000 genomes]
rs2026029	0.83[EUR][1000 genomes]
rs2149498	0.85[EUR][1000 genomes]
rs2183095	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2407265	0.85[EUR][1000 genomes]
rs2407266	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2897633	0.80[EUR][1000 genomes]
rs2987528	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2987532	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2987535	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2994377	0.81[AMR][1000 genomes]
rs2994379	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2994380	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2994381	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3012116	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3012117	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3012118	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3012121	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3012127	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3012133	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3012135	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3012136	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4942795	0.83[EUR][1000 genomes]
rs4942796	0.85[EUR][1000 genomes]
rs4942798	0.84[EUR][1000 genomes]
rs4942799	0.83[EUR][1000 genomes]
rs6561491	0.86[EUR][1000 genomes]
rs7139854	0.83[EUR][1000 genomes]
rs720627	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs728075	0.85[EUR][1000 genomes]
rs7322842	0.81[ASN][1000 genomes]
rs7328000	0.81[EUR][1000 genomes]
rs7329291	0.84[EUR][1000 genomes]
rs7983885	0.83[EUR][1000 genomes]
rs7986624	0.84[EUR][1000 genomes]
rs7988168	0.82[EUR][1000 genomes]
rs7997118	0.85[EUR][1000 genomes]
rs7998359	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7999513	0.85[EUR][1000 genomes]
rs9316426	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9316428	0.80[EUR][1000 genomes]
rs9526518	0.84[EUR][1000 genomes]
rs9526520	0.83[EUR][1000 genomes]
rs9526521	0.82[EUR][1000 genomes]
rs9535126	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9535133	0.84[EUR][1000 genomes]
rs9535136	0.82[EUR][1000 genomes]
rs9562866	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9591235	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1034	chr13:49526761-49572727	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3506285	chr13:49531551-49538549	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv455882	chr13:49531551-49679157	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv561593	chr13:49531551-49679157	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv511507	chr13:49532972-49540727	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv1839780	chr13:49533568-49540727	Enhancers Weak transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv1792084	chr13:49536705-49549571	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links