Variant report

Variant	rs4942796
Chromosome Location	chr13:49586018-49586019
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs12872974	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1359066	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1407827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs1407829	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1535922	0.95[CEU][hapmap];0.82[CHB][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap]
rs1928109	0.82[CEU][hapmap];0.91[CHB][hapmap];0.95[EUR][1000 genomes]
rs1928110	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1937180	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1937181	0.95[CEU][hapmap];0.91[CHB][hapmap]
rs1983805	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2021622	0.85[EUR][1000 genomes]
rs2026029	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146748	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs2149498	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2181537	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2181538	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2181539	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2183095	0.86[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2407265	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2407266	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2897633	0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2897689	0.90[CEU][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.85[MKK][hapmap];0.90[YRI][hapmap]
rs2987528	0.95[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2987532	0.91[CEU][hapmap];0.91[CHB][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2987535	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2994377	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2994378	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2994379	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2994380	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2994381	0.90[EUR][1000 genomes]
rs3012116	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs3012117	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs3012118	0.96[EUR][1000 genomes]
rs3012121	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs3012127	0.95[CEU][hapmap];0.91[CHB][hapmap];0.90[EUR][1000 genomes]
rs3012133	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3012135	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3012136	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4142065	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs4258502	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs4530025	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs4942795	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4942798	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4942799	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4942800	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6561491	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6561493	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6561496	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs6561497	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.80[TSI][hapmap]
rs6561504	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7139854	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs720627	0.91[CEU][hapmap];0.91[CHB][hapmap];0.89[GIH][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs728075	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7318871	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7325026	0.85[EUR][1000 genomes]
rs7328000	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7329291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7331917	0.82[EUR][1000 genomes]
rs7333097	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7333285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs7338529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7983885	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7986624	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7987258	0.91[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.84[TSI][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7988168	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7989175	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7994368	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.90[YRI][hapmap];0.89[ASN][1000 genomes]
rs7994910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7995616	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7997118	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7998359	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7999513	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8248	0.83[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs9316426	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9316427	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9316428	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9316429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs9526517	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9526518	0.95[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9526520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9526521	0.93[GIH][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535126	0.95[CEU][hapmap];0.91[CHB][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9535133	0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9535136	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9535140	0.86[EUR][1000 genomes]
rs9535141	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9535145	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs9535146	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs9535147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9535149	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9535154	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs9535155	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs9535156	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9535166	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs9535167	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs9562866	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9562870	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9568143	0.83[CHB][hapmap];0.95[CHD][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs9568150	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs9568151	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs9568154	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9591235	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049117	chr13:49089476-49928945	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv455882	chr13:49531551-49679157	Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv561593	chr13:49531551-49679157	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv1793883	chr13:49543723-49789164	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv900067	chr13:49552271-49594818	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900068	chr13:49559790-49605774	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv1803100	chr13:49576474-49655941	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3375439	chr13:49585551-49589749	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4942796	SERP2	cis	cerebellum	SCAN

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:49551400-49638800	Weak transcription	Pancreas	Pancrea
2	chr13:49553600-49596200	Weak transcription	Ovary	ovary
3	chr13:49557000-49626800	Weak transcription	Right Ventricle	heart
4	chr13:49560000-49587600	Weak transcription	Fetal Kidney	kidney
5	chr13:49560800-49587200	Weak transcription	Small Intestine	intestine
6	chr13:49568000-49598200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr13:49568800-49626800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:49568800-49627000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr13:49572000-49604800	Weak transcription	Aorta	Aorta
10	chr13:49573400-49634800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr13:49573600-49595600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr13:49575000-49587200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr13:49576000-49587000	Weak transcription	Brain Germinal Matrix	brain
14	chr13:49576200-49595400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:49577200-49586400	Weak transcription	Fetal Brain Female	brain
16	chr13:49578000-49586200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr13:49578600-49587000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr13:49578600-49587400	Weak transcription	Fetal Lung	lung
19	chr13:49578600-49596200	Weak transcription	A549	lung
20	chr13:49578800-49586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:49578800-49587000	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr13:49578800-49587200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr13:49578800-49587400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr13:49578800-49593200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr13:49578800-49593600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr13:49578800-49597600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:49579000-49594400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr13:49579000-49596200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr13:49579600-49589200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr13:49579800-49587200	Weak transcription	Brain Anterior Caudate	brain
31	chr13:49579800-49587200	Weak transcription	Lung	lung
32	chr13:49579800-49594600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr13:49579800-49595600	Weak transcription	Fetal Muscle Leg	muscle
34	chr13:49580000-49587600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr13:49580000-49593600	Weak transcription	HepG2	liver
36	chr13:49580200-49586600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr13:49580200-49586800	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr13:49580400-49587800	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr13:49580600-49586200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr13:49580600-49597800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr13:49580800-49587800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:49581200-49595600	Weak transcription	NH-A	brain
43	chr13:49581400-49595600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr13:49581600-49587600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr13:49581800-49586200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr13:49581800-49587200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr13:49581800-49594400	Weak transcription	NHEK	skin
48	chr13:49581800-49606000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr13:49582000-49589200	Weak transcription	Adipose Nuclei	Adipose
50	chr13:49582000-49589200	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links