Variant report

Variant	rs73250348
Chromosome Location	chr5:113079538-113079539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs56121036	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57295502	1.00[AMR][1000 genomes]
rs58203814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60321322	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6879431	1.00[AMR][1000 genomes]
rs6895014	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6895838	1.00[AMR][1000 genomes]
rs73240242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246999	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73247338	1.00[AMR][1000 genomes]
rs73248814	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248820	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248861	1.00[AMR][1000 genomes]
rs73248875	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248877	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250358	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73250361	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462390	chr5:113076095-113181289	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv471041	chr5:113076095-113181289	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv599408	chr5:113076095-113181289	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432799	chr5:113077017-113150101	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv599409	chr5:113079354-113184211	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113079200-113079800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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