Variant report

Variant	rs7325518
Chromosome Location	chr13:39791652-39791653
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11838834	0.91[ASN][1000 genomes]
rs11840389	0.83[ASN][1000 genomes]
rs11843557	0.83[ASN][1000 genomes]
rs12429285	0.91[ASN][1000 genomes]
rs17528800	0.91[ASN][1000 genomes]
rs17529092	0.80[ASN][1000 genomes]
rs944863	0.91[ASN][1000 genomes]
rs944864	0.91[ASN][1000 genomes]
rs951369	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9532357	0.95[ASN][1000 genomes]
rs9548696	0.91[ASN][1000 genomes]
rs9548701	0.83[ASN][1000 genomes]
rs9548708	0.91[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1048391	chr13:39735088-39832358	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39790600-39791800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr13:39790800-39791800	Enhancers	Brain Cingulate Gyrus	brain
3	chr13:39790800-39792200	Enhancers	Brain Hippocampus Middle	brain
4	chr13:39791400-39791800	Flanking Active TSS	Brain Anterior Caudate	brain
5	chr13:39791400-39791800	Flanking Active TSS	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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