Variant report

Variant	rs9548708
Chromosome Location	chr13:39828832-39828833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11838834	0.89[ASN][1000 genomes]
rs11840389	0.97[ASN][1000 genomes]
rs11843557	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12429285	0.89[ASN][1000 genomes]
rs17528800	0.89[ASN][1000 genomes]
rs17529092	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67959715	0.85[AFR][1000 genomes]
rs7325518	0.81[ASN][1000 genomes]
rs944863	0.89[ASN][1000 genomes]
rs944864	0.89[ASN][1000 genomes]
rs951369	0.84[ASN][1000 genomes]
rs9532357	0.85[ASN][1000 genomes]
rs9548696	0.89[ASN][1000 genomes]
rs9548701	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1048391	chr13:39735088-39832358	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1036124	chr13:39735088-39837566	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1047276	chr13:39735088-39839257	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv900007	chr13:39801283-39849423	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39824800-39831000	Weak transcription	Right Ventricle	heart
2	chr13:39825000-39833600	Weak transcription	Fetal Stomach	stomach
3	chr13:39827800-39829400	Enhancers	Fetal Muscle Leg	muscle
4	chr13:39827800-39829400	Enhancers	Left Ventricle	heart
5	chr13:39827800-39829600	Enhancers	Fetal Heart	heart
6	chr13:39828000-39831800	Enhancers	Fetal Lung	lung
7	chr13:39828200-39831400	Weak transcription	Psoas Muscle	Psoas
8	chr13:39828400-39829200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr13:39828400-39831200	Weak transcription	Ovary	ovary
10	chr13:39828600-39829400	Enhancers	Adipose Nuclei	Adipose
11	chr13:39828800-39829000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:39828800-39829000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr13:39828800-39830000	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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