Variant report
Variant | rs73255992 |
---|---|
Chromosome Location | chr14:31014096-31014097 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12100621 | 1.00[AMR][1000 genomes] |
rs57216699 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57549139 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57618174 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs57677010 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58653311 | 0.83[AFR][1000 genomes] |
rs60350877 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60353606 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60362029 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs60727186 | 0.83[AFR][1000 genomes] |
rs73251132 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251134 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251145 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251146 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251151 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251156 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251167 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251168 | 1.00[AMR][1000 genomes] |
rs73251169 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251177 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251179 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251181 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251184 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251188 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73251199 | 0.83[AFR][1000 genomes] |
rs73253017 | 0.83[AFR][1000 genomes] |
rs73254546 | 0.83[AFR][1000 genomes] |
rs73254548 | 0.83[AFR][1000 genomes] |
rs73254552 | 0.83[AFR][1000 genomes] |
rs73254553 | 0.83[AFR][1000 genomes] |
rs73254554 | 0.83[AFR][1000 genomes] |
rs73254555 | 0.83[AFR][1000 genomes] |
rs73254556 | 0.83[AFR][1000 genomes] |
rs73254560 | 0.83[AFR][1000 genomes] |
rs73254565 | 0.83[AFR][1000 genomes] |
rs73254568 | 0.83[AFR][1000 genomes] |
rs73254580 | 0.83[AFR][1000 genomes] |
rs73254583 | 0.83[AFR][1000 genomes] |
rs73254586 | 0.83[AFR][1000 genomes] |
rs73254588 | 0.83[AFR][1000 genomes] |
rs73254589 | 0.83[AFR][1000 genomes] |
rs73255979 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73258111 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73258118 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73258119 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264309 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264311 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264321 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264329 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264330 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264333 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264341 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264346 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264352 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73264358 | 1.00[AMR][1000 genomes] |
rs73264362 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv564169 | chr14:30819087-31541494 | Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
2 | nsv1036419 | chr14:30969616-31224226 | Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
3 | nsv901581 | chr14:30978745-31585289 | Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr14:31002400-31020800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |