Variant report

Variant	rs73264352
Chromosome Location	chr14:31072101-31072102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31069776..31071443-chr14:31072053..31074757,2	K562	blood:
2	chr14:31070404..31072787-chr14:31077582..31080526,2	K562	blood:
3	chr14:31071248..31073927-chr14:31089916..31091588,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092108	Chromatin interaction
ENSG00000092140	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12100621	1.00[AMR][1000 genomes]
rs57216699	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57549139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57618174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57677010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58653311	0.83[AFR][1000 genomes]
rs60350877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60353606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60362029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60727186	0.83[AFR][1000 genomes]
rs73251132	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251156	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251167	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251168	1.00[AMR][1000 genomes]
rs73251169	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251177	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251179	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251181	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251184	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251188	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73251199	0.83[AFR][1000 genomes]
rs73253017	0.83[AFR][1000 genomes]
rs73254546	0.83[AFR][1000 genomes]
rs73254548	0.83[AFR][1000 genomes]
rs73254552	0.83[AFR][1000 genomes]
rs73254553	0.83[AFR][1000 genomes]
rs73254554	0.83[AFR][1000 genomes]
rs73254555	0.83[AFR][1000 genomes]
rs73254556	0.83[AFR][1000 genomes]
rs73254560	0.83[AFR][1000 genomes]
rs73254565	0.83[AFR][1000 genomes]
rs73254568	0.83[AFR][1000 genomes]
rs73254580	0.83[AFR][1000 genomes]
rs73254583	0.83[AFR][1000 genomes]
rs73254586	0.83[AFR][1000 genomes]
rs73254588	0.83[AFR][1000 genomes]
rs73254589	0.83[AFR][1000 genomes]
rs73255979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73255992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73258111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73258118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73258119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264358	1.00[AMR][1000 genomes]
rs73264362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1036419	chr14:30969616-31224226	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv564171	chr14:31068090-31149630	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31043000-31079600	Weak transcription	Gastric	stomach
2	chr14:31043000-31090600	Weak transcription	Small Intestine	intestine
3	chr14:31047000-31079600	Weak transcription	Pancreas	Pancrea
4	chr14:31049600-31079600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:31050200-31079800	Weak transcription	Brain Angular Gyrus	brain
6	chr14:31051800-31079600	Weak transcription	Fetal Brain Male	brain
7	chr14:31052000-31077400	Weak transcription	Psoas Muscle	Psoas
8	chr14:31053600-31079800	Weak transcription	Brain Substantia Nigra	brain
9	chr14:31053800-31090600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr14:31054200-31090400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:31054800-31087200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr14:31055000-31086800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr14:31055600-31088000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr14:31057400-31077600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr14:31057800-31079800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:31058400-31080000	Weak transcription	Fetal Heart	heart
17	chr14:31058800-31074800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:31059800-31080000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:31061600-31090400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr14:31064200-31078200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr14:31064400-31087800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr14:31064600-31073800	Strong transcription	Primary B cells from cord blood	blood
23	chr14:31064800-31078000	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr14:31064800-31086600	Strong transcription	Dnd41	blood
25	chr14:31064800-31087800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:31065000-31075000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr14:31065400-31075000	Strong transcription	GM12878-XiMat	blood
28	chr14:31065600-31072600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:31065600-31076800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr14:31065600-31086600	Strong transcription	HepG2	liver
31	chr14:31065800-31083000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:31065800-31086800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:31065800-31087000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr14:31065800-31087600	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr14:31066000-31074400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr14:31066000-31074800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:31066000-31078200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:31066000-31082400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:31066600-31074400	Strong transcription	Fetal Thymus	thymus
40	chr14:31066800-31072200	Strong transcription	NHDF-Ad	bronchial
41	chr14:31066800-31073800	Strong transcription	HSMM	muscle
42	chr14:31066800-31074400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr14:31066800-31074400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr14:31066800-31074400	Strong transcription	Fetal Muscle Leg	muscle
45	chr14:31066800-31074600	Strong transcription	H1 Cell Line	embryonic stem cell
46	chr14:31066800-31074600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:31066800-31074600	Strong transcription	Fetal Muscle Trunk	muscle
48	chr14:31066800-31075000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr14:31066800-31075000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr14:31066800-31075000	Strong transcription	Fetal Intestine Large	intestine

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