Variant report
| Variant | rs73257137 |
|---|---|
| Chromosome Location | chr8:63504493-63504494 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:124913520..124914257-chr8:63504216..63505103,2 | HCT-116 | colon: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000154473 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs73255091 | 1.00[AMR][1000 genomes] |
| rs73259160 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73259161 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73259167 | 0.92[AFR][1000 genomes] |
| rs73259169 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73259173 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73260908 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018879 | chr8:63281724-63937632 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv890959 | chr8:63449156-63515522 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
