Variant report

Variant	rs73259169
Chromosome Location	chr8:63506510-63506511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs73255091	1.00[AMR][1000 genomes]
rs73257137	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259160	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259161	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73259167	0.84[AFR][1000 genomes]
rs73259173	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73260908	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv890959	chr8:63449156-63515522	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63505800-63507200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:63506000-63506800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
3	chr8:63506200-63506800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:63506200-63507200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr8:63506200-63507400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr8:63506400-63506800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:63506400-63507000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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