Variant report

Variant	rs73258496
Chromosome Location	chr7:19437243-19437244
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10224600	1.00[AMR][1000 genomes]
rs10226921	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10233342	1.00[AMR][1000 genomes]
rs10236903	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10241920	1.00[AMR][1000 genomes]
rs10271764	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73258477	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73258482	1.00[AMR][1000 genomes]
rs73258499	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73258502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73260205	1.00[AMR][1000 genomes]
rs73684877	1.00[AMR][1000 genomes]
rs73684884	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022118	chr7:19178075-19518160	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887819	chr7:19262091-19658389	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
4	nsv1021194	chr7:19290916-19521199	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1021479	chr7:19363947-19485519	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv887820	chr7:19378959-19448729	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv887821	chr7:19381523-19448729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv2752996	chr7:19392086-19684019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv2757219	chr7:19396146-19574066	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv2759517	chr7:19396146-19620962	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv442033	chr7:19412599-19545311	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv818491	chr7:19413271-19547949	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv34500	chr7:19415543-19573763	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv470155	chr7:19421606-19452649	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
15	esv2758107	chr7:19436043-19620962	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19432600-19437400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:19432600-19437400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr7:19432600-19437400	Weak transcription	NHDF-Ad	bronchial
4	chr7:19432800-19437400	Weak transcription	NH-A	brain
5	chr7:19432800-19441400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:19437000-19438200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr7:19437000-19438600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:19437000-19438600	Enhancers	Dnd41	blood
9	chr7:19437000-19439600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr7:19437200-19437400	Enhancers	Osteobl	bone
11	chr7:19437200-19437600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:19437200-19437600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:19437200-19437600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr7:19437200-19437800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:19437200-19437800	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr7:19437200-19437800	Enhancers	HSMM	muscle
17	chr7:19437200-19438000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:19437200-19438200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr7:19437200-19438200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:19437200-19438400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links