Variant report
| Variant | rs73260748 |
|---|---|
| Chromosome Location | chr10:44125139-44125140 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | JUND | chr10:44124897-44125163 | HepG2 | liver: | n/a | n/a |
| 2 | ZNF263 | chr10:44125084-44125415 | HEK293-T-REx | kidney: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000238263 | TF binding region |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs17154123 | 1.00[AMR][1000 genomes] |
| rs41422044 | 1.00[AMR][1000 genomes] |
| rs56908285 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58627507 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73260746 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73260750 | 0.93[AFR][1000 genomes] |
| rs73260755 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73260756 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73260769 | 1.00[AMR][1000 genomes] |
| rs872533 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv947898 | chr10:44124512-44127210 | Inactive region | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
