Variant report

Variant	rs73262354
Chromosome Location	chr12:21815663-21815664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr12:21815658-21815669	A549	lung:	n/a	n/a
2	MAX	chr12:21815247-21815871	A549	lung:	n/a	n/a
3	RAD21	chr12:21815551-21815727	A549	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C12orf39-1	chr12:21815247-21815705	ENSG00000256615.1

Variant related genes	Relation type
LDHB	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11836605	1.00[AMR][1000 genomes]
rs1283796	1.00[AMR][1000 genomes]
rs1283803	1.00[AMR][1000 genomes]
rs1283818	1.00[AMR][1000 genomes]
rs153942	1.00[AMR][1000 genomes]
rs1650272	1.00[AMR][1000 genomes]
rs1650311	1.00[AMR][1000 genomes]
rs1677075	1.00[AMR][1000 genomes]
rs1677080	1.00[AMR][1000 genomes]
rs1677081	1.00[AMR][1000 genomes]
rs1677090	1.00[AMR][1000 genomes]
rs1677124	1.00[AMR][1000 genomes]
rs1677129	1.00[AMR][1000 genomes]
rs1677134	1.00[AMR][1000 genomes]
rs1677140	1.00[AMR][1000 genomes]
rs2544443	1.00[AMR][1000 genomes]
rs255450	1.00[AMR][1000 genomes]
rs255454	1.00[AMR][1000 genomes]
rs60507695	1.00[AMR][1000 genomes]
rs60867568	1.00[AMR][1000 genomes]
rs61320912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs704199	1.00[AMR][1000 genomes]
rs704200	1.00[AMR][1000 genomes]
rs704201	1.00[AMR][1000 genomes]
rs704204	1.00[AMR][1000 genomes]
rs73249205	1.00[AMR][1000 genomes]
rs73258133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73260142	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73260149	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262383	1.00[AMR][1000 genomes]
rs73262391	1.00[AMR][1000 genomes]
rs73262395	1.00[AMR][1000 genomes]
rs73266378	1.00[AMR][1000 genomes]
rs73266381	1.00[AMR][1000 genomes]
rs759933	1.00[AMR][1000 genomes]
rs829067	1.00[AMR][1000 genomes]
rs829071	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043936	chr12:21562673-21979030	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv557741	chr12:21578559-22169854	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv469164	chr12:21688900-21966701	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv557744	chr12:21688900-21966701	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv832349	chr12:21749093-21930695	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv12759	chr12:21815499-21816988	Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv557746	chr12:21815529-21816272	Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv557747	chr12:21815529-21816447	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv557748	chr12:21815529-21816831	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv557749	chr12:21815631-21816831	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21810800-21816400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr12:21815400-21815800	Active TSS	Muscle Satellite Cultured Cells	--
3	chr12:21815400-21815800	Active TSS	Fetal Muscle Trunk	muscle
4	chr12:21815400-21816000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
5	chr12:21815400-21816200	Active TSS	A549	lung
6	chr12:21815600-21815800	Active TSS	Skeletal Muscle Male	skeletal muscle

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