Variant report

Variant	rs73262456
Chromosome Location	chr12:39441425-39441426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57180514	0.83[AFR][1000 genomes]
rs57821811	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59922185	1.00[AMR][1000 genomes]
rs73262452	1.00[AMR][1000 genomes]
rs73264503	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73264520	1.00[AMR][1000 genomes]
rs73274793	0.80[AFR][1000 genomes]
rs73274801	0.80[AFR][1000 genomes]
rs73276422	0.80[AFR][1000 genomes]
rs73276479	0.80[AFR][1000 genomes]
rs73278531	0.90[AFR][1000 genomes]
rs7955996	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3389115	chr12:39221256-39448458	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39437200-39452400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr12:39441200-39441800	Enhancers	Brain Hippocampus Middle	brain
3	chr12:39441200-39442000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:39441200-39442000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:39441400-39442000	Enhancers	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links