Variant report
| Variant | rs73276422 |
|---|---|
| Chromosome Location | chr12:39349791-39349792 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:39343718..39345753-chr12:39348375..39350244,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs57803586 | 1.00[AMR][1000 genomes] |
| rs61038488 | 1.00[AMR][1000 genomes] |
| rs73262456 | 0.80[AFR][1000 genomes] |
| rs73264539 | 1.00[AMR][1000 genomes] |
| rs73273192 | 1.00[AMR][1000 genomes] |
| rs73273200 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73274725 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73274731 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73274793 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73274801 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73276479 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73278531 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7955996 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047623 | chr12:39187817-39539939 | Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | esv3389115 | chr12:39221256-39448458 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv899009 | chr12:39284077-39441096 | Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | esv2761733 | chr12:39309714-39413045 | Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:39349600-39351000 | Enhancers | Hela-S3 | cervix |
