Variant report

Variant	rs73264903
Chromosome Location	chr12:11005785-11005786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:10994480..10997147-chr12:11004836..11006507,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7314347	1.00[AMR][1000 genomes]
rs73262951	1.00[AMR][1000 genomes]
rs73264938	1.00[AMR][1000 genomes]
rs73265389	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv898776	chr12:10909412-11032045	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2758294	chr12:10969620-11714921	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
4	esv2759879	chr12:10969620-11714921	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10973600-11009600	Weak transcription	HSMM	muscle
2	chr12:10988400-11006000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:10988400-11008400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:10989200-11008600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr12:10989400-11008200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:10990000-11008400	Weak transcription	Fetal Lung	lung
7	chr12:10990200-11008400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:10991200-11007800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:10991200-11008000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr12:10991400-11010800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr12:10993200-11008000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr12:10993600-11007600	Weak transcription	Fetal Intestine Small	intestine
13	chr12:10993800-11008600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr12:10994000-11007800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr12:10994000-11008000	Weak transcription	Brain Germinal Matrix	brain
16	chr12:10994000-11008200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:10994000-11008400	Weak transcription	Brain Substantia Nigra	brain
18	chr12:10994000-11008400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr12:10994200-11006000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr12:10994200-11008400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:10994200-11008400	Weak transcription	Thymus	Thymus
22	chr12:10994200-11008400	Weak transcription	HepG2	liver
23	chr12:10994200-11008600	Weak transcription	Spleen	Spleen
24	chr12:10994400-11008400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr12:10994400-11035000	Weak transcription	Fetal Kidney	kidney
26	chr12:10994800-11008400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr12:10995600-11010800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr12:10995800-11005800	Weak transcription	Lung	lung
29	chr12:10995800-11008400	Weak transcription	Brain Hippocampus Middle	brain
30	chr12:10997600-11008200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr12:10997800-11006200	Weak transcription	Small Intestine	intestine
32	chr12:10997800-11007400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr12:10998000-11008200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr12:10998200-11007600	Weak transcription	Fetal Brain Female	brain
35	chr12:10998200-11008600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr12:10998600-11008400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr12:10998600-11034800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr12:10999000-11010600	Weak transcription	Brain Angular Gyrus	brain
39	chr12:10999000-11029200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr12:10999200-11008400	Weak transcription	Fetal Thymus	thymus
41	chr12:10999800-11008600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr12:11000000-11008200	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr12:11000000-11008400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr12:11000000-11008400	Weak transcription	Fetal Stomach	stomach
45	chr12:11000000-11008600	Weak transcription	Liver	Liver
46	chr12:11000000-11010400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr12:11000200-11005800	Weak transcription	Aorta	Aorta
48	chr12:11000200-11006000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr12:11000200-11008000	Weak transcription	Fetal Muscle Leg	muscle
50	chr12:11000200-11008400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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