Variant report

Variant	rs73266105
Chromosome Location	chr5:119853199-119853200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:119803768..119806715-chr5:119850808..119853246,2	K562	blood:
2	chr5:119852123..119854010-chr5:120038446..120041236,2	K562	blood:
3	chr5:119851956..119854339-chr5:119862015..119863785,2	K562	blood:
4	chr5:119798174..119800652-chr5:119851053..119853705,2	K562	blood:
5	chr5:119852641..119855403-chr5:119858663..119861465,3	K562	blood:
6	chr5:119851956..119853481-chr5:119862285..119864209,2	K562	blood:
7	chr5:119801016..119803100-chr5:119851238..119853983,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17425658	0.86[EUR][1000 genomes]
rs17425812	0.86[EUR][1000 genomes]
rs73262114	1.00[AMR][1000 genomes]
rs73262115	1.00[AMR][1000 genomes]
rs73262120	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264180	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73264197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73266189	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462427	chr5:119838923-119928674	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv599601	chr5:119838923-119928674	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119839800-119879800	Weak transcription	Psoas Muscle	Psoas
2	chr5:119844200-119864200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:119851400-119853400	Enhancers	NHDF-Ad	bronchial
4	chr5:119852200-119853600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:119852200-119853800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:119852200-119854000	Enhancers	NH-A	brain
7	chr5:119852200-119854600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:119852200-119854600	Enhancers	Osteobl	bone
9	chr5:119852200-119855000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:119852400-119853200	Enhancers	HSMM	muscle
11	chr5:119852400-119853800	Enhancers	HSMMtube	muscle
12	chr5:119852400-119853800	Enhancers	NHLF	lung
13	chr5:119852400-119854600	Enhancers	K562	blood
14	chr5:119852800-119853200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr5:119852800-119853600	Weak transcription	Aorta	Aorta
16	chr5:119852800-119854000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:119852800-119854000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr5:119853000-119853400	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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