Variant report

Variant	rs73266189
Chromosome Location	chr5:119865175-119865176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17425658	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17425812	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73262120	0.86[EUR][1000 genomes]
rs73264162	0.86[EUR][1000 genomes]
rs73264167	0.86[EUR][1000 genomes]
rs73264171	0.86[EUR][1000 genomes]
rs73264177	0.86[EUR][1000 genomes]
rs73264180	0.86[EUR][1000 genomes]
rs73264183	0.86[EUR][1000 genomes]
rs73264188	0.86[EUR][1000 genomes]
rs73264192	0.86[EUR][1000 genomes]
rs73264197	0.86[EUR][1000 genomes]
rs73266105	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv462427	chr5:119838923-119928674	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv599601	chr5:119838923-119928674	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv948613	chr5:119861955-119999008	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119839800-119879800	Weak transcription	Psoas Muscle	Psoas
2	chr5:119854000-119868800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:119862800-119865400	Enhancers	HSMMtube	muscle
4	chr5:119864000-119865200	Enhancers	NHDF-Ad	bronchial
5	chr5:119864000-119865400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:119864200-119865200	Enhancers	HSMM	muscle
7	chr5:119864200-119865400	Enhancers	Osteobl	bone
8	chr5:119864400-119867200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:119864600-119866400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:119864600-119871400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr5:119864600-119874200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr5:119864600-119874400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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