Variant report

Variant	rs73268748
Chromosome Location	chr7:22010326-22010327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1174988	1.00[EUR][1000 genomes]
rs1174997	1.00[EUR][1000 genomes]
rs1174999	1.00[EUR][1000 genomes]
rs1406706	1.00[EUR][1000 genomes]
rs1534763	1.00[EUR][1000 genomes]
rs1730902	1.00[EUR][1000 genomes]
rs4521668	1.00[EUR][1000 genomes]
rs57121717	1.00[EUR][1000 genomes]
rs57454869	1.00[EUR][1000 genomes]
rs6461618	1.00[EUR][1000 genomes]
rs73268753	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268755	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73268756	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
3	nsv1029966	chr7:21999316-22028266	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22005800-22011600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:22006000-22011200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:22006200-22010800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:22007600-22011400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:22007600-22012200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:22008000-22012000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:22008000-22012000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:22008400-22012000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:22008600-22011400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:22008600-22011600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr7:22009200-22011800	Weak transcription	Primary B cells from peripheral blood	blood
12	chr7:22009800-22010400	Enhancers	Fetal Stomach	stomach
13	chr7:22010000-22010400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links