Variant report

Variant	rs73268756
Chromosome Location	chr7:22011854-22011855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1174988	1.00[EUR][1000 genomes]
rs1174997	1.00[EUR][1000 genomes]
rs1174999	1.00[EUR][1000 genomes]
rs1406706	1.00[EUR][1000 genomes]
rs1534763	1.00[EUR][1000 genomes]
rs1730902	1.00[EUR][1000 genomes]
rs4521668	1.00[EUR][1000 genomes]
rs57121717	1.00[EUR][1000 genomes]
rs57454869	1.00[EUR][1000 genomes]
rs6461618	1.00[EUR][1000 genomes]
rs73268748	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73268755	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
3	nsv1029966	chr7:21999316-22028266	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22007600-22012200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:22008000-22012000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr7:22008000-22012000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr7:22008400-22012000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:22011200-22012200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr7:22011400-22012400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr7:22011400-22012400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:22011400-22012400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:22011600-22012400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr7:22011600-22012400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:22011600-22012400	Flanking Active TSS	Hela-S3	cervix
12	chr7:22011800-22012200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr7:22011800-22012400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr7:22011800-22012400	Enhancers	Primary B cells from peripheral blood	blood
15	chr7:22011800-22012400	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:22011800-22012400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:22011800-22012600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:22011800-22012600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links