Variant report

Variant	rs73271349
Chromosome Location	chr8:100683194-100683195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1487023	1.00[AMR][1000 genomes]
rs59713666	1.00[AMR][1000 genomes]
rs6999918	1.00[AMR][1000 genomes]
rs7001662	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271304	1.00[AMR][1000 genomes]
rs73271307	1.00[AMR][1000 genomes]
rs73271310	1.00[AMR][1000 genomes]
rs73271311	1.00[AMR][1000 genomes]
rs73271318	1.00[AMR][1000 genomes]
rs73271339	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271343	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271344	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271352	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271375	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271377	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271380	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271381	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73271383	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7833906	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524617	chr8:100032844-100717925	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1022914	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv539695	chr8:100190356-100720313	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv891226	chr8:100295634-100708595	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	nsv891227	chr8:100295634-100743556	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1019256	chr8:100336249-100852803	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
7	nsv539698	chr8:100336249-100852803	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
8	esv2758167	chr8:100404151-100838624	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
9	esv2759633	chr8:100404151-100838624	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1029616	chr8:100442135-100796643	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1023922	chr8:100474230-100702005	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
12	nsv831408	chr8:100523523-100721507	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
13	esv1850143	chr8:100650034-100692370	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1817528	chr8:100653252-100685771	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:100631600-100683800	Weak transcription	Aorta	Aorta
2	chr8:100646600-100686400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr8:100655800-100685000	Weak transcription	Primary B cells from cord blood	blood
4	chr8:100656000-100694400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:100662200-100684800	Weak transcription	Primary T cells from cord blood	blood
6	chr8:100668000-100688400	Weak transcription	Ovary	ovary
7	chr8:100668200-100686000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr8:100668400-100686600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr8:100669600-100686200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:100671600-100683800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:100672000-100697400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr8:100673400-100686000	Weak transcription	HSMMtube	muscle
13	chr8:100673800-100688400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:100674600-100694000	Weak transcription	HSMM	muscle
15	chr8:100675000-100688200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr8:100675200-100686200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr8:100675400-100706000	Weak transcription	Left Ventricle	heart
18	chr8:100675600-100683600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:100676000-100686200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:100676400-100686200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr8:100681000-100688200	Weak transcription	Gastric	stomach
22	chr8:100682400-100694800	Weak transcription	Pancreas	Pancrea
23	chr8:100683000-100683200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
24	chr8:100683000-100684000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr8:100683000-100684200	ZNF genes & repeats	Fetal Lung	lung

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