Variant report

Variant	rs73272632
Chromosome Location	chr12:41733364-41733365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11180190	1.00[AMR][1000 genomes]
rs73268706	1.00[AMR][1000 genomes]
rs73272637	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272682	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274414	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274490	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41730400-41734600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:41731800-41733800	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41732800-41734800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:41733000-41733600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:41733000-41734200	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:41733000-41734200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:41733200-41734200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:41733200-41734600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:41733200-41734600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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