Variant report

Variant	rs73272909
Chromosome Location	chr20:15426271-15426272
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062252	chr20:14964258-15547739	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv544206	chr20:14964258-15547739	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv833927	chr20:15362602-15520185	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15421200-15426600	Weak transcription	Fetal Intestine Small	intestine
2	chr20:15421400-15427000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr20:15421600-15426400	Weak transcription	Colon Smooth Muscle	Colon
4	chr20:15421800-15426400	Weak transcription	Adipose Nuclei	Adipose
5	chr20:15421800-15426800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr20:15425800-15426600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr20:15425800-15426600	Enhancers	Fetal Muscle Leg	muscle
8	chr20:15425800-15426600	Enhancers	Fetal Stomach	stomach
9	chr20:15426200-15426600	Enhancers	Aorta	Aorta
10	chr20:15426200-15427000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:15426200-15427600	Weak transcription	Fetal Kidney	kidney
12	chr20:15426200-15427800	Enhancers	Small Intestine	intestine
13	chr20:15426200-15428200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr20:15426200-15428200	Enhancers	HMEC	breast
15	chr20:15426200-15428600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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