Variant report

Variant	rs73274816
Chromosome Location	chr20:41161010-41161011
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11904854	0.89[EUR][1000 genomes]
rs6016806	0.93[EUR][1000 genomes]
rs6016807	0.89[EUR][1000 genomes]
rs6016808	0.89[EUR][1000 genomes]
rs6016810	0.93[EUR][1000 genomes]
rs6030273	0.89[EUR][1000 genomes]
rs6030274	0.89[EUR][1000 genomes]
rs6030275	0.93[EUR][1000 genomes]
rs6030276	0.93[EUR][1000 genomes]
rs6030277	0.93[EUR][1000 genomes]
rs6030282	0.93[EUR][1000 genomes]
rs6030286	0.89[EUR][1000 genomes]
rs6030289	0.89[EUR][1000 genomes]
rs6093659	0.93[EUR][1000 genomes]
rs6093660	0.93[EUR][1000 genomes]
rs6102855	0.93[EUR][1000 genomes]
rs6102856	0.93[EUR][1000 genomes]
rs6102859	0.93[EUR][1000 genomes]
rs6102860	0.89[EUR][1000 genomes]
rs6102870	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6102871	0.93[EUR][1000 genomes]
rs7263792	0.89[EUR][1000 genomes]
rs73273400	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv586006	chr20:41157707-41290936	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41158800-41161200	Enhancers	Fetal Brain Female	brain
2	chr20:41159000-41161200	Enhancers	Brain Germinal Matrix	brain
3	chr20:41159200-41161200	Enhancers	Adipose Nuclei	Adipose
4	chr20:41160600-41161200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr20:41160800-41173000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr20:41161000-41163000	Weak transcription	Pancreas	Pancrea

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