Variant report
| Variant | rs73273400 |
|---|---|
| Chromosome Location | chr20:41147002-41147003 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:115299136..115301683-chr20:41145782..41147834,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000009307 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs10485694 | 1.00[ASN][1000 genomes] |
| rs11904854 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11906033 | 1.00[ASN][1000 genomes] |
| rs11907808 | 1.00[ASN][1000 genomes] |
| rs2049969 | 1.00[ASN][1000 genomes] |
| rs35041089 | 1.00[ASN][1000 genomes] |
| rs35324452 | 1.00[ASN][1000 genomes] |
| rs35762999 | 1.00[ASN][1000 genomes] |
| rs35800638 | 1.00[ASN][1000 genomes] |
| rs57772475 | 1.00[ASN][1000 genomes] |
| rs57920496 | 1.00[ASN][1000 genomes] |
| rs6016806 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6016807 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6016808 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6016809 | 1.00[ASN][1000 genomes] |
| rs6016810 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6016813 | 1.00[ASN][1000 genomes] |
| rs6030272 | 0.84[EUR][1000 genomes] |
| rs6030273 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6030274 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6030275 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6030276 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6030277 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6030282 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6030286 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6030289 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6093659 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6093660 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6102825 | 1.00[ASN][1000 genomes] |
| rs6102855 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6102856 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6102859 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6102860 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6102863 | 1.00[ASN][1000 genomes] |
| rs6102870 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6102871 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7263792 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73095839 | 1.00[ASN][1000 genomes] |
| rs73271582 | 1.00[ASN][1000 genomes] |
| rs73271583 | 1.00[ASN][1000 genomes] |
| rs73274816 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73908945 | 1.00[ASN][1000 genomes] |
| rs8118149 | 1.00[ASN][1000 genomes] |
| rs8122692 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv833987 | chr20:41007663-41184914 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1059852 | chr20:41087948-41217672 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv544276 | chr20:41087948-41217672 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv1055546 | chr20:41102999-41260749 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | esv1807209 | chr20:41107678-41154898 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv1064253 | chr20:41120425-41379706 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 8 | nsv1061449 | chr20:41126720-41212178 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
