Variant report

Variant	rs57772475
Chromosome Location	chr20:41165408-41165409
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10485694	1.00[ASN][1000 genomes]
rs11904854	1.00[ASN][1000 genomes]
rs11906033	1.00[ASN][1000 genomes]
rs11907808	1.00[ASN][1000 genomes]
rs2049969	1.00[ASN][1000 genomes]
rs35041089	1.00[ASN][1000 genomes]
rs35324452	1.00[ASN][1000 genomes]
rs35762999	1.00[ASN][1000 genomes]
rs35800638	1.00[ASN][1000 genomes]
rs55707675	1.00[ASN][1000 genomes]
rs57920496	1.00[ASN][1000 genomes]
rs6016806	1.00[ASN][1000 genomes]
rs6016807	1.00[ASN][1000 genomes]
rs6016808	1.00[ASN][1000 genomes]
rs6016809	1.00[ASN][1000 genomes]
rs6016810	1.00[ASN][1000 genomes]
rs6016813	1.00[ASN][1000 genomes]
rs6030273	1.00[ASN][1000 genomes]
rs6030274	1.00[ASN][1000 genomes]
rs6030275	1.00[ASN][1000 genomes]
rs6030276	1.00[ASN][1000 genomes]
rs6030277	1.00[ASN][1000 genomes]
rs6030282	1.00[ASN][1000 genomes]
rs6030286	1.00[ASN][1000 genomes]
rs6030289	1.00[ASN][1000 genomes]
rs6093659	1.00[ASN][1000 genomes]
rs6093660	1.00[ASN][1000 genomes]
rs6102825	1.00[ASN][1000 genomes]
rs6102855	1.00[ASN][1000 genomes]
rs6102856	1.00[ASN][1000 genomes]
rs6102859	1.00[ASN][1000 genomes]
rs6102860	1.00[ASN][1000 genomes]
rs6102863	1.00[ASN][1000 genomes]
rs6102870	1.00[ASN][1000 genomes]
rs6102871	1.00[ASN][1000 genomes]
rs7263792	1.00[ASN][1000 genomes]
rs73095839	1.00[ASN][1000 genomes]
rs73271582	1.00[ASN][1000 genomes]
rs73271583	1.00[ASN][1000 genomes]
rs73273400	1.00[ASN][1000 genomes]
rs73908945	1.00[ASN][1000 genomes]
rs8118149	1.00[ASN][1000 genomes]
rs8122692	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv833987	chr20:41007663-41184914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	nsv1059852	chr20:41087948-41217672	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv544276	chr20:41087948-41217672	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1055546	chr20:41102999-41260749	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1064253	chr20:41120425-41379706	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1061449	chr20:41126720-41212178	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv586006	chr20:41157707-41290936	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv828726	chr20:41161919-41166198	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:41160800-41173000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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