Variant report
| Variant | rs10485694 |
|---|---|
| Chromosome Location | chr20:41067572-41067573 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs11904854 | 1.00[ASN][1000 genomes] |
| rs11906033 | 1.00[ASN][1000 genomes] |
| rs11907808 | 1.00[ASN][1000 genomes] |
| rs2049969 | 1.00[ASN][1000 genomes] |
| rs35041089 | 1.00[ASN][1000 genomes] |
| rs35324452 | 1.00[ASN][1000 genomes] |
| rs35762999 | 1.00[ASN][1000 genomes] |
| rs35800638 | 1.00[ASN][1000 genomes] |
| rs57772475 | 1.00[ASN][1000 genomes] |
| rs57920496 | 1.00[ASN][1000 genomes] |
| rs6016806 | 1.00[ASN][1000 genomes] |
| rs6016807 | 1.00[ASN][1000 genomes] |
| rs6016808 | 1.00[ASN][1000 genomes] |
| rs6016809 | 1.00[ASN][1000 genomes] |
| rs6016810 | 1.00[ASN][1000 genomes] |
| rs6016813 | 1.00[ASN][1000 genomes] |
| rs6030273 | 1.00[ASN][1000 genomes] |
| rs6030274 | 1.00[ASN][1000 genomes] |
| rs6030275 | 1.00[ASN][1000 genomes] |
| rs6030276 | 1.00[ASN][1000 genomes] |
| rs6030277 | 1.00[ASN][1000 genomes] |
| rs6030282 | 1.00[ASN][1000 genomes] |
| rs6030286 | 1.00[ASN][1000 genomes] |
| rs6030289 | 1.00[ASN][1000 genomes] |
| rs6093659 | 1.00[ASN][1000 genomes] |
| rs6093660 | 1.00[ASN][1000 genomes] |
| rs6102825 | 1.00[ASN][1000 genomes] |
| rs6102855 | 1.00[ASN][1000 genomes] |
| rs6102856 | 1.00[ASN][1000 genomes] |
| rs6102859 | 1.00[ASN][1000 genomes] |
| rs6102860 | 1.00[ASN][1000 genomes] |
| rs6102863 | 1.00[ASN][1000 genomes] |
| rs6102870 | 1.00[ASN][1000 genomes] |
| rs6102871 | 1.00[ASN][1000 genomes] |
| rs7263792 | 1.00[ASN][1000 genomes] |
| rs73271582 | 1.00[ASN][1000 genomes] |
| rs73271583 | 1.00[ASN][1000 genomes] |
| rs73273400 | 1.00[ASN][1000 genomes] |
| rs73908945 | 1.00[ASN][1000 genomes] |
| rs8118149 | 1.00[ASN][1000 genomes] |
| rs8122692 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2751913 | chr20:40422982-41269321 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv532516 | chr20:40451059-41097155 | Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv833987 | chr20:41007663-41184914 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:41042000-41070000 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr20:41067200-41069800 | Weak transcription | Fetal Muscle Leg | muscle |
| 3 | chr20:41067400-41069800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
