Variant report

Variant	rs73274916
Chromosome Location	chr20:53092288-53092289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PFDN4-2	chr20:53092165-53092551	NONHSAT080419

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs956414	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53091000-53093200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr20:53091000-53093200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr20:53091000-53093600	Active TSS	H9 Cell Line	embryonic stem cell
4	chr20:53091400-53092400	Enhancers	Fetal Brain Male	brain
5	chr20:53091400-53092800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr20:53091400-53093000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr20:53091400-53093000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr20:53091400-53093000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
9	chr20:53091400-53093200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
10	chr20:53091400-53093200	Active TSS	Colon Smooth Muscle	Colon
11	chr20:53091400-53093200	Active TSS	Fetal Kidney	kidney
12	chr20:53091400-53093400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr20:53091400-53094200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:53091600-53092400	Active TSS	Brain Cingulate Gyrus	brain
15	chr20:53091600-53092400	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr20:53091600-53092600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr20:53091600-53092600	Active TSS	Brain Germinal Matrix	brain
18	chr20:53091600-53092600	Active TSS	Brain Substantia Nigra	brain
19	chr20:53091600-53092800	Active TSS	Brain Anterior Caudate	brain
20	chr20:53091600-53092800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
21	chr20:53091600-53092800	Active TSS	Fetal Lung	lung
22	chr20:53091600-53092800	Bivalent/Poised TSS	Fetal Stomach	stomach
23	chr20:53091600-53092800	Active TSS	Ovary	ovary
24	chr20:53091600-53092800	Active TSS	Rectal Smooth Muscle	rectum
25	chr20:53091600-53092800	Active TSS	NH-A	brain
26	chr20:53091600-53093000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr20:53091600-53093000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr20:53091600-53093000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
29	chr20:53091600-53093000	Active TSS	Osteobl	bone
30	chr20:53091600-53093200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr20:53091600-53093200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr20:53091600-53093200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr20:53091600-53093600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr20:53091600-53093600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
35	chr20:53091600-53093600	Active TSS	Right Ventricle	heart
36	chr20:53091600-53093800	Active TSS	Psoas Muscle	Psoas
37	chr20:53091600-53094000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr20:53091800-53092400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr20:53091800-53092400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr20:53091800-53092400	Active TSS	Fetal Brain Female	brain
41	chr20:53091800-53092400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
42	chr20:53091800-53092600	Bivalent/Poised TSS	A549	lung
43	chr20:53091800-53092800	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
44	chr20:53091800-53092800	Active TSS	Left Ventricle	heart
45	chr20:53091800-53093000	Active TSS	H1 Cell Line	embryonic stem cell
46	chr20:53091800-53093000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr20:53091800-53093000	Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr20:53091800-53093000	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr20:53091800-53093000	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr20:53091800-53093000	Bivalent/Poised TSS	Fetal Intestine Small	intestine

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