Variant report

Variant	rs956414
Chromosome Location	chr20:53094861-53094862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53094262..53095242-chr20:53265441..53266262,2	MCF-7	breast:
2	chr20:53094793..53096626-chr20:53100134..53103148,3	MCF-7	breast:
3	chr20:53067433..53069648-chr20:53093856..53096720,2	MCF-7	breast:
4	chr20:53094603..53097316-chr20:53132108..53133984,2	MCF-7	breast:
5	chr20:53073105..53076272-chr20:53092801..53096708,6	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73274916	0.92[AFR][1000 genomes]
rs73274963	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53092000-53095000	Active TSS	Brain Angular Gyrus	brain
2	chr20:53093400-53096200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:53093400-53096400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr20:53093400-53106400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr20:53093600-53095000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:53093600-53096400	Active TSS	Fetal Brain Female	brain
7	chr20:53093800-53099000	Weak transcription	Ovary	ovary
8	chr20:53094000-53095000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr20:53094000-53095200	Enhancers	Brain Germinal Matrix	brain
10	chr20:53094000-53111600	Weak transcription	Fetal Muscle Leg	muscle
11	chr20:53094200-53095200	Enhancers	Osteobl	bone
12	chr20:53094200-53095400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
13	chr20:53094200-53095400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr20:53094200-53096200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr20:53094400-53096000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr20:53094600-53095000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr20:53094600-53095400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr20:53094600-53095400	Flanking Active TSS	NHDF-Ad	bronchial
19	chr20:53094800-53095200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr20:53094800-53095200	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
21	chr20:53094800-53095600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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