Variant report
| Variant | rs73275596 |
|---|---|
| Chromosome Location | chr12:45417641-45417642 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs2658991 | 1.00[AMR][1000 genomes] |
| rs268033 | 1.00[AMR][1000 genomes] |
| rs268038 | 1.00[AMR][1000 genomes] |
| rs2703036 | 1.00[AMR][1000 genomes] |
| rs2703044 | 1.00[AMR][1000 genomes] |
| rs2710427 | 1.00[AMR][1000 genomes] |
| rs2710432 | 1.00[AMR][1000 genomes] |
| rs58109917 | 1.00[AMR][1000 genomes] |
| rs58840891 | 1.00[AMR][1000 genomes] |
| rs73275512 | 1.00[AMR][1000 genomes] |
| rs73275524 | 1.00[AMR][1000 genomes] |
| rs73275531 | 1.00[AMR][1000 genomes] |
| rs73275551 | 1.00[AMR][1000 genomes] |
| rs73279134 | 1.00[AMR][1000 genomes] |
| rs73279144 | 1.00[AMR][1000 genomes] |
| rs73279145 | 1.00[AMR][1000 genomes] |
| rs73279158 | 1.00[AMR][1000 genomes] |
| rs73279176 | 1.00[AMR][1000 genomes] |
| rs73281008 | 1.00[AMR][1000 genomes] |
| rs73281095 | 1.00[AMR][1000 genomes] |
| rs73281098 | 1.00[AMR][1000 genomes] |
| rs73283039 | 1.00[AMR][1000 genomes] |
| rs73287011 | 1.00[AMR][1000 genomes] |
| rs73288970 | 1.00[AMR][1000 genomes] |
| rs73288973 | 1.00[AMR][1000 genomes] |
| rs73288975 | 1.00[AMR][1000 genomes] |
| rs73288980 | 1.00[AMR][1000 genomes] |
| rs73288988 | 1.00[AMR][1000 genomes] |
| rs73288990 | 1.00[AMR][1000 genomes] |
| rs73288993 | 1.00[AMR][1000 genomes] |
| rs73290682 | 1.00[AMR][1000 genomes] |
| rs73290685 | 1.00[AMR][1000 genomes] |
| rs73290688 | 1.00[AMR][1000 genomes] |
| rs73290690 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3351644 | chr12:45345597-45529449 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045857 | chr12:45351172-45468784 | Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv541485 | chr12:45351172-45468784 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:45414800-45418200 | Strong transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
| 2 | chr12:45417400-45419000 | Genic enhancers | Cortex derived primary cultured neurospheres | brain |
