Variant report
| Variant | rs73287011 |
|---|---|
| Chromosome Location | chr12:45340143-45340144 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:44152736..44154248-chr12:45340094..45342820,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198001 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs2658991 | 1.00[AMR][1000 genomes] |
| rs268033 | 1.00[AMR][1000 genomes] |
| rs268038 | 1.00[AMR][1000 genomes] |
| rs2703036 | 1.00[AMR][1000 genomes] |
| rs2703044 | 1.00[AMR][1000 genomes] |
| rs2710427 | 1.00[AMR][1000 genomes] |
| rs2710432 | 1.00[AMR][1000 genomes] |
| rs58109917 | 1.00[AMR][1000 genomes] |
| rs58840891 | 1.00[AMR][1000 genomes] |
| rs73275512 | 1.00[AMR][1000 genomes] |
| rs73275524 | 1.00[AMR][1000 genomes] |
| rs73275531 | 1.00[AMR][1000 genomes] |
| rs73275551 | 1.00[AMR][1000 genomes] |
| rs73275596 | 1.00[AMR][1000 genomes] |
| rs73277300 | 1.00[AMR][1000 genomes] |
| rs73279134 | 1.00[AMR][1000 genomes] |
| rs73279144 | 1.00[AMR][1000 genomes] |
| rs73279145 | 1.00[AMR][1000 genomes] |
| rs73279158 | 1.00[AMR][1000 genomes] |
| rs73279176 | 1.00[AMR][1000 genomes] |
| rs73281008 | 1.00[AMR][1000 genomes] |
| rs73281095 | 1.00[AMR][1000 genomes] |
| rs73281098 | 1.00[AMR][1000 genomes] |
| rs73283039 | 1.00[AMR][1000 genomes] |
| rs73288970 | 1.00[AMR][1000 genomes] |
| rs73288973 | 1.00[AMR][1000 genomes] |
| rs73288975 | 1.00[AMR][1000 genomes] |
| rs73288980 | 1.00[AMR][1000 genomes] |
| rs73288988 | 1.00[AMR][1000 genomes] |
| rs73288990 | 1.00[AMR][1000 genomes] |
| rs73288993 | 1.00[AMR][1000 genomes] |
| rs73290682 | 1.00[AMR][1000 genomes] |
| rs73290685 | 1.00[AMR][1000 genomes] |
| rs73290688 | 1.00[AMR][1000 genomes] |
| rs73290690 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899049 | chr12:45299202-45376053 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899050 | chr12:45299202-45400614 | Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899051 | chr12:45307633-45376053 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv527565 | chr12:45319767-45365812 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:45337000-45342400 | Weak transcription | HepG2 | liver |
