Variant report

Variant	rs73279256
Chromosome Location	chr8:102965469-102965470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102958971..102963759-chr8:102964426..102969369,7	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12114981	1.00[AMR][1000 genomes]
rs59524805	0.84[AFR][1000 genomes]
rs73279254	0.84[AFR][1000 genomes]
rs73279295	1.00[AMR][1000 genomes]
rs73279297	1.00[AMR][1000 genomes]
rs73279300	1.00[AMR][1000 genomes]
rs73279301	1.00[AMR][1000 genomes]
rs73281304	1.00[AMR][1000 genomes]
rs73293347	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102957600-102970200	Weak transcription	Esophagus	oesophagus
2	chr8:102960800-102966400	Weak transcription	Primary T cells from cord blood	blood
3	chr8:102961000-102971200	Weak transcription	Aorta	Aorta
4	chr8:102961400-102965600	Enhancers	Fetal Heart	heart
5	chr8:102962800-102966200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:102963000-102968000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:102963000-102969600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:102963000-102969800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:102963200-102968200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:102963200-102969800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:102963200-102973600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:102963600-102966000	Enhancers	Right Atrium	heart
13	chr8:102964000-102965600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:102964200-102965600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:102964200-102965600	Enhancers	Lung	lung
16	chr8:102964200-102966000	Enhancers	GM12878-XiMat	blood
17	chr8:102964400-102966400	Enhancers	Fetal Muscle Trunk	muscle
18	chr8:102964400-102966600	Enhancers	Left Ventricle	heart
19	chr8:102964400-102966800	Enhancers	Right Ventricle	heart
20	chr8:102964600-102965800	Enhancers	Fetal Brain Male	brain
21	chr8:102964600-102965800	Enhancers	Fetal Muscle Leg	muscle
22	chr8:102964600-102966400	Enhancers	Psoas Muscle	Psoas
23	chr8:102964600-102967000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:102964800-102965600	Enhancers	Ovary	ovary
25	chr8:102964800-102965600	Enhancers	Rectal Smooth Muscle	rectum
26	chr8:102965000-102965600	Enhancers	Fetal Thymus	thymus
27	chr8:102965000-102966200	Enhancers	Fetal Brain Female	brain
28	chr8:102965200-102965600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr8:102965200-102965600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr8:102965200-102970800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr8:102965400-102965600	Enhancers	Colon Smooth Muscle	Colon
32	chr8:102965400-102966200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr8:102965400-102969600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr8:102965400-102969800	Weak transcription	NHDF-Ad	bronchial
35	chr8:102965400-102971000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:102965400-102989800	Weak transcription	Stomach Smooth Muscle	stomach

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