Variant report

Variant	rs73280869
Chromosome Location	chr8:102903081-102903082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:102895916..102899783-chr8:102900314..102903177,4	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs58196146	1.00[AMR][1000 genomes]
rs58704718	1.00[AMR][1000 genomes]
rs60341429	1.00[AMR][1000 genomes]
rs73280814	1.00[AMR][1000 genomes]
rs73280829	1.00[AMR][1000 genomes]
rs73280834	1.00[AMR][1000 genomes]
rs73280840	1.00[AMR][1000 genomes]
rs73280843	1.00[AMR][1000 genomes]
rs73280897	1.00[AFR][1000 genomes]
rs73280898	1.00[AFR][1000 genomes]
rs73282616	1.00[AFR][1000 genomes]
rs73282625	0.90[AFR][1000 genomes]
rs73290532	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102896400-102914800	Weak transcription	Right Ventricle	heart
2	chr8:102897600-102903600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:102898000-102914600	Weak transcription	Ovary	ovary
4	chr8:102898800-102903200	Weak transcription	NHEK	skin
5	chr8:102899600-102903200	Weak transcription	Primary T cells from cord blood	blood
6	chr8:102899600-102904600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr8:102899600-102914600	Weak transcription	Left Ventricle	heart
8	chr8:102899800-102904000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr8:102900000-102903400	Enhancers	K562	blood
10	chr8:102900800-102903200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:102901400-102904000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:102901600-102903800	Weak transcription	Stomach Mucosa	stomach
13	chr8:102901800-102903800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:102902200-102903400	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:102902200-102903600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:102902200-102905000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:102902400-102910000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:102902600-102903200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr8:102902600-102903200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:102902600-102903800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr8:102902600-102904000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr8:102902600-102904200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr8:102902800-102903200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:102902800-102903800	Enhancers	HMEC	breast
25	chr8:102902800-102904000	Weak transcription	Psoas Muscle	Psoas
26	chr8:102902800-102904200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr8:102903000-102903200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr8:102903000-102903400	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr8:102903000-102904000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr8:102903000-102910000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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