Variant report

Variant	rs73282616
Chromosome Location	chr8:102924980-102924981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73280869	1.00[AFR][1000 genomes]
rs73280897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73280898	1.00[AFR][1000 genomes]
rs73282625	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv465749	chr8:102847202-102929460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv611819	chr8:102847202-102929460	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102915200-102938800	Weak transcription	Aorta	Aorta
2	chr8:102916200-102932200	Weak transcription	Lung	lung
3	chr8:102916200-102942600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:102920600-102956600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:102920800-102925000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:102921000-102925000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:102921000-102930400	Weak transcription	NHDF-Ad	bronchial
8	chr8:102921200-102938200	Weak transcription	Ovary	ovary
9	chr8:102921400-102928800	Weak transcription	Primary T cells from cord blood	blood
10	chr8:102923200-102925000	Enhancers	Fetal Heart	heart
11	chr8:102923200-102925000	Weak transcription	Psoas Muscle	Psoas
12	chr8:102923800-102927400	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:102924000-102925400	Enhancers	HMEC	breast
14	chr8:102924400-102925000	Weak transcription	Left Ventricle	heart
15	chr8:102924400-102925200	Flanking Active TSS	GM12878-XiMat	blood
16	chr8:102924600-102925200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr8:102924600-102925400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr8:102924600-102925400	Enhancers	NHEK	skin
19	chr8:102924800-102925200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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