Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:39336463..39337323-chr14:39484303..39484820,2	MCF-7	breast:
2	chr14:39190836..39192002-chr14:39336266..39337492,9	MCF-7	breast:
3	chr14:39190760..39191270-chr14:39336463..39337395,3	K562	blood:
4	chr14:39333342..39335144-chr14:39336605..39338510,2	K562	blood:

rSNPs within LD-proxies of this variant (count:9)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564416	chr14:39140536-39440106	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv470631	chr14:39153764-39440106	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv932194	chr14:39173578-39411337	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39334800-39339000	Enhancers	Brain Cingulate Gyrus	brain
2	chr14:39334800-39340000	Enhancers	Brain Hippocampus Middle	brain
3	chr14:39334800-39340200	Enhancers	Brain Substantia Nigra	brain
4	chr14:39335200-39337400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr14:39335200-39337600	Weak transcription	Pancreas	Pancrea
6	chr14:39335600-39337600	Enhancers	Fetal Intestine Small	intestine
7	chr14:39336200-39337600	Weak transcription	Fetal Intestine Large	intestine
8	chr14:39336200-39338400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr14:39336600-39337800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:39336600-39339800	Enhancers	Stomach Mucosa	stomach
11	chr14:39336600-39340000	Enhancers	Fetal Kidney	kidney
12	chr14:39336800-39337400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr14:39336800-39337600	Enhancers	Liver	Liver
14	chr14:39336800-39337600	Weak transcription	Brain Anterior Caudate	brain
15	chr14:39336800-39339200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr14:39337000-39337400	Weak transcription	Fetal Lung	lung
17	chr14:39337000-39337400	Weak transcription	HUVEC	blood vessel
18	chr14:39337000-39337600	Enhancers	HepG2	liver
19	chr14:39337000-39338600	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:39337000-39342400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:39337200-39338400	Weak transcription	Brain Angular Gyrus	brain

Quick Search: