Variant report
| Variant | rs73283041 |
|---|---|
| Chromosome Location | chr12:45309771-45309772 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:8)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:8 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| NELL2 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs2703058 | 1.00[AMR][1000 genomes] |
| rs2710422 | 1.00[AMR][1000 genomes] |
| rs2710423 | 1.00[AMR][1000 genomes] |
| rs369442 | 1.00[AMR][1000 genomes] |
| rs60628417 | 1.00[AMR][1000 genomes] |
| rs73277302 | 1.00[AMR][1000 genomes] |
| rs73279103 | 1.00[AMR][1000 genomes] |
| rs73279110 | 1.00[AMR][1000 genomes] |
| rs73279111 | 1.00[AMR][1000 genomes] |
| rs73279124 | 1.00[AMR][1000 genomes] |
| rs73279126 | 1.00[AMR][1000 genomes] |
| rs73279129 | 1.00[AMR][1000 genomes] |
| rs73279149 | 1.00[AMR][1000 genomes] |
| rs73279151 | 1.00[AMR][1000 genomes] |
| rs73279187 | 1.00[AMR][1000 genomes] |
| rs73281085 | 1.00[AMR][1000 genomes] |
| rs73283042 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73284986 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73287008 | 1.00[AMR][1000 genomes] |
| rs73287009 | 1.00[AMR][1000 genomes] |
| rs73288937 | 1.00[AMR][1000 genomes] |
| rs73288940 | 1.00[AMR][1000 genomes] |
| rs73288992 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899049 | chr12:45299202-45376053 | Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv899050 | chr12:45299202-45400614 | Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv899051 | chr12:45307633-45376053 | Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
