Variant report

Variant	rs73288940
Chromosome Location	chr12:45344725-45344726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs2703058	1.00[AMR][1000 genomes]
rs2710422	1.00[AMR][1000 genomes]
rs2710423	1.00[AMR][1000 genomes]
rs369442	1.00[AMR][1000 genomes]
rs60628417	1.00[AMR][1000 genomes]
rs73277302	1.00[AMR][1000 genomes]
rs73279103	1.00[AMR][1000 genomes]
rs73279110	1.00[AMR][1000 genomes]
rs73279111	1.00[AMR][1000 genomes]
rs73279124	1.00[AMR][1000 genomes]
rs73279126	1.00[AMR][1000 genomes]
rs73279129	1.00[AMR][1000 genomes]
rs73279149	1.00[AMR][1000 genomes]
rs73279151	1.00[AMR][1000 genomes]
rs73279187	1.00[AMR][1000 genomes]
rs73281085	1.00[AMR][1000 genomes]
rs73283041	1.00[AMR][1000 genomes]
rs73283042	1.00[AMR][1000 genomes]
rs73284986	1.00[AMR][1000 genomes]
rs73287008	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287009	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288937	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288992	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899049	chr12:45299202-45376053	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv899050	chr12:45299202-45400614	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv899051	chr12:45307633-45376053	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv527565	chr12:45319767-45365812	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3407092	chr12:45342734-45368068	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45344400-45345000	Active TSS	K562	blood
2	chr12:45344400-45345200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr12:45344600-45344800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr12:45344600-45344800	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:45344600-45345000	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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