Variant report

Variant	rs7328355
Chromosome Location	chr13:92052386-92052387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:92051686..92054316-chr13:92235885..92238525,2	K562	blood:
2	chr13:92027534..92028128-chr13:92051898..92052619,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1324062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224851	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7322083	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7330545	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9515923	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523325	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523328	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
4	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
5	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92050200-92052600	Active TSS	Brain Cingulate Gyrus	brain
2	chr13:92050400-92052600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:92050400-92052600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr13:92050600-92052400	Bivalent/Poised TSS	Fetal Kidney	kidney
5	chr13:92050600-92052600	Active TSS	Brain Substantia Nigra	brain
6	chr13:92050600-92053200	Active TSS	Brain Anterior Caudate	brain
7	chr13:92050600-92055200	Active TSS	Hela-S3	cervix
8	chr13:92051000-92052800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:92051400-92052400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr13:92051400-92053400	Active TSS	GM12878-XiMat	blood
11	chr13:92051600-92052400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr13:92051600-92052400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
13	chr13:92051600-92053200	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr13:92051800-92052400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr13:92051800-92052400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr13:92051800-92052400	Active TSS	Lung	lung
17	chr13:92052000-92052400	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
18	chr13:92052000-92052400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr13:92052000-92052400	Flanking Active TSS	Brain Angular Gyrus	brain
20	chr13:92052000-92052400	Genic enhancers	Right Atrium	heart
21	chr13:92052200-92052400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:92052200-92052400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
23	chr13:92052200-92052400	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr13:92052200-92052400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr13:92052200-92052400	Bivalent Enhancer	Liver	Liver
26	chr13:92052200-92052400	Bivalent/Poised TSS	Stomach Mucosa	stomach
27	chr13:92052200-92052400	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
28	chr13:92052200-92052800	Active TSS	Brain Hippocampus Middle	brain

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