Variant report

Variant	rs9523325
Chromosome Location	chr13:92051677-92051678
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1324062	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2224851	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7322083	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7328355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330545	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9515923	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523328	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
2	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
3	esv1803618	chr13:91669587-92277699	Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1945 gene(s)	inside rSNPs	diseases
4	nsv1050259	chr13:91759549-92152078	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
5	nsv541872	chr13:91759549-92152078	Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1944 gene(s)	inside rSNPs	diseases
6	nsv1049382	chr13:92024240-92521180	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv541873	chr13:92024240-92521180	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:92050200-92052600	Active TSS	Brain Cingulate Gyrus	brain
2	chr13:92050400-92051800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:92050400-92051800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:92050400-92052000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr13:92050400-92052000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr13:92050400-92052000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr13:92050400-92052600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:92050400-92052600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:92050600-92051800	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:92050600-92051800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr13:92050600-92051800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr13:92050600-92051800	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
13	chr13:92050600-92051800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
14	chr13:92050600-92052000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr13:92050600-92052000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr13:92050600-92052000	Active TSS	Brain Angular Gyrus	brain
17	chr13:92050600-92052000	Transcr. at gene 5' and 3'	Right Atrium	heart
18	chr13:92050600-92052200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr13:92050600-92052200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:92050600-92052400	Bivalent/Poised TSS	Fetal Kidney	kidney
21	chr13:92050600-92052600	Active TSS	Brain Substantia Nigra	brain
22	chr13:92050600-92053200	Active TSS	Brain Anterior Caudate	brain
23	chr13:92050600-92055200	Active TSS	Hela-S3	cervix
24	chr13:92050800-92051800	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr13:92050800-92051800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:92051000-92051800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr13:92051000-92051800	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
28	chr13:92051000-92051800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
29	chr13:92051000-92051800	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr13:92051000-92051800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr13:92051000-92051800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
32	chr13:92051000-92051800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
33	chr13:92051000-92051800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr13:92051000-92051800	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
35	chr13:92051000-92051800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
36	chr13:92051000-92052000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr13:92051000-92052000	Flanking Active TSS	Liver	Liver
38	chr13:92051000-92052000	Bivalent Enhancer	Fetal Brain Male	brain
39	chr13:92051000-92052800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr13:92051200-92051800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr13:92051200-92051800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
42	chr13:92051200-92051800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
43	chr13:92051200-92051800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr13:92051200-92051800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
45	chr13:92051200-92051800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
46	chr13:92051200-92051800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
47	chr13:92051200-92051800	Flanking Active TSS	Lung	lung
48	chr13:92051200-92051800	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
49	chr13:92051200-92051800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
50	chr13:92051200-92052000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell

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