Variant report

Variant	rs73283862
Chromosome Location	chr10:44479135-44479136
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs35742275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57065456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6593387	1.00[EUR][1000 genomes]
rs7080468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73275938	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73275969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73275972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73275979	1.00[EUR][1000 genomes]
rs73277923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283866	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285469	1.00[EUR][1000 genomes]
rs7921743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44469800-44482800	Weak transcription	Gastric	stomach
2	chr10:44479000-44480200	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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