Variant report

Variant	rs7921743
Chromosome Location	chr10:44355471-44355472
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:44355270..44357315-chr10:44376908..44378969,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf136-1	chr10:44354859-44355808	XLOC_008473
2	lnc-C10orf136-1	chr10:44354910-44355808	XLOC_008473
3	lnc-C10orf136-1	chr10:44354909-44355808	NONHSAT012999

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs35742275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57065456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58440555	1.00[AFR][1000 genomes]
rs58605440	1.00[AFR][1000 genomes]
rs6593387	1.00[EUR][1000 genomes]
rs7080468	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73265874	1.00[AFR][1000 genomes]
rs73266583	1.00[AFR][1000 genomes]
rs73268410	0.87[AFR][1000 genomes]
rs73268427	1.00[AFR][1000 genomes]
rs73268446	1.00[AFR][1000 genomes]
rs73268468	1.00[AFR][1000 genomes]
rs73268474	1.00[AFR][1000 genomes]
rs73268480	1.00[AFR][1000 genomes]
rs73268484	1.00[AFR][1000 genomes]
rs73270332	1.00[AFR][1000 genomes]
rs73270342	1.00[AFR][1000 genomes]
rs73270344	1.00[AFR][1000 genomes]
rs73270346	1.00[AFR][1000 genomes]
rs73270349	1.00[AFR][1000 genomes]
rs73275923	1.00[AFR][1000 genomes]
rs73275932	1.00[AFR][1000 genomes]
rs73275938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73275945	1.00[AFR][1000 genomes]
rs73275947	1.00[AFR][1000 genomes]
rs73275964	1.00[AFR][1000 genomes]
rs73275968	1.00[AFR][1000 genomes]
rs73275969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73275972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73275979	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73276532	1.00[AFR][1000 genomes]
rs73276558	1.00[AFR][1000 genomes]
rs73276559	1.00[AFR][1000 genomes]
rs73276560	1.00[AFR][1000 genomes]
rs73277923	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73283891	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73285469	1.00[EUR][1000 genomes]
rs7904663	1.00[AFR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44340800-44357600	Weak transcription	Aorta	Aorta
2	chr10:44351000-44357800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:44351400-44358000	Weak transcription	Adipose Nuclei	Adipose
4	chr10:44352000-44359200	Weak transcription	Fetal Heart	heart
5	chr10:44352400-44355800	Enhancers	HUVEC	blood vessel
6	chr10:44352800-44357400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:44352800-44357400	Weak transcription	Hela-S3	cervix
8	chr10:44353000-44359600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr10:44353200-44358200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:44353400-44357400	Weak transcription	Stomach Mucosa	stomach
11	chr10:44353400-44358400	Weak transcription	Fetal Stomach	stomach
12	chr10:44353400-44358400	Weak transcription	Gastric	stomach
13	chr10:44353400-44358800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:44353400-44358800	Weak transcription	Pancreas	Pancrea
15	chr10:44353600-44359600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:44353800-44357400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:44354000-44357600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:44354200-44357200	Weak transcription	Osteobl	bone
19	chr10:44354400-44357200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:44354600-44357200	Weak transcription	NHLF	lung
21	chr10:44354800-44356800	Weak transcription	NHDF-Ad	bronchial
22	chr10:44354800-44357000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr10:44355000-44355800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr10:44355000-44357200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:44355200-44357800	Weak transcription	Left Ventricle	heart
26	chr10:44355200-44357800	Weak transcription	Lung	lung
27	chr10:44355200-44357800	Weak transcription	Right Atrium	heart

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