Variant report

Variant	rs73283931
Chromosome Location	chr7:27435826-27435827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28398493	1.00[AMR][1000 genomes]
rs28398546	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282177	1.00[AMR][1000 genomes]
rs73283948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286071	1.00[AMR][1000 genomes]
rs73286100	1.00[AMR][1000 genomes]
rs73287942	1.00[AMR][1000 genomes]
rs73287957	1.00[AMR][1000 genomes]
rs73290345	1.00[AMR][1000 genomes]
rs7810111	1.00[AMR][1000 genomes]
rs9690446	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9691294	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27435600-27437000	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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