Variant report

Variant	rs9690446
Chromosome Location	chr7:27470336-27470337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28361586	0.91[AFR][1000 genomes]
rs28398493	1.00[AMR][1000 genomes]
rs28398546	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282177	1.00[AMR][1000 genomes]
rs73283931	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283948	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284457	1.00[AMR][1000 genomes]
rs73285185	1.00[AMR][1000 genomes]
rs73286071	1.00[AMR][1000 genomes]
rs73286100	1.00[AMR][1000 genomes]
rs73287109	1.00[AMR][1000 genomes]
rs73287942	1.00[AMR][1000 genomes]
rs73287957	1.00[AMR][1000 genomes]
rs7810111	1.00[AMR][1000 genomes]
rs9691294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27463400-27471800	Weak transcription	Spleen	Spleen
2	chr7:27465200-27472200	Weak transcription	Stomach Mucosa	stomach
3	chr7:27466200-27473800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:27469600-27472800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:27469800-27473000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:27470000-27472800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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