Variant report

Variant	rs73287109
Chromosome Location	chr7:27660925-27660926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs59094104	1.00[AFR][1000 genomes]
rs60339717	1.00[AMR][1000 genomes]
rs73284457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284495	1.00[AMR][1000 genomes]
rs73285185	1.00[AMR][1000 genomes]
rs73286071	1.00[AMR][1000 genomes]
rs73286100	1.00[AMR][1000 genomes]
rs73287942	1.00[AMR][1000 genomes]
rs73287957	1.00[AMR][1000 genomes]
rs73289998	1.00[AMR][1000 genomes]
rs73291816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293827	1.00[AFR][1000 genomes]
rs73293846	1.00[AFR][1000 genomes]
rs73293879	1.00[AFR][1000 genomes]
rs7810111	1.00[AMR][1000 genomes]
rs9690446	1.00[AMR][1000 genomes]
rs9691294	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv1802647	chr7:27658495-27673924	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27651800-27674200	Weak transcription	Hela-S3	cervix
2	chr7:27654400-27696400	Weak transcription	Gastric	stomach
3	chr7:27655400-27665200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr7:27657200-27662200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:27657400-27661800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:27657400-27661800	ZNF genes & repeats	Fetal Intestine Large	intestine
7	chr7:27657400-27662600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
8	chr7:27658000-27661400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
9	chr7:27658200-27661200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:27658200-27661400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
11	chr7:27658400-27661000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:27658400-27661000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:27658400-27661200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr7:27658400-27661200	ZNF genes & repeats	Fetal Lung	lung
15	chr7:27658400-27661400	ZNF genes & repeats	Liver	Liver
16	chr7:27658400-27662000	ZNF genes & repeats	Dnd41	blood
17	chr7:27658600-27661000	ZNF genes & repeats	Brain Substantia Nigra	brain
18	chr7:27658600-27661000	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
19	chr7:27658600-27661200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:27658600-27661200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr7:27658800-27687800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:27658800-27688600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:27659200-27661200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr7:27659400-27661000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:27659400-27661000	ZNF genes & repeats	A549	lung
26	chr7:27659600-27661000	ZNF genes & repeats	HSMM	muscle
27	chr7:27659600-27661400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
28	chr7:27659800-27661000	ZNF genes & repeats	HepG2	liver
29	chr7:27659800-27661600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:27659800-27672800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:27659800-27675400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:27659800-27679000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr7:27660000-27661000	Strong transcription	Placenta	Placenta
34	chr7:27660000-27661200	Weak transcription	Aorta	Aorta
35	chr7:27660000-27661200	Weak transcription	Lung	lung
36	chr7:27660000-27664400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr7:27660000-27667600	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr7:27660000-27669800	Weak transcription	Left Ventricle	heart
39	chr7:27660000-27680600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr7:27660200-27661000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr7:27660200-27661000	ZNF genes & repeats	Stomach Smooth Muscle	stomach
42	chr7:27660200-27661800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
43	chr7:27660200-27668000	Weak transcription	Osteobl	bone
44	chr7:27660200-27674600	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:27660400-27661000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:27660400-27661000	Weak transcription	Ovary	ovary
47	chr7:27660400-27668600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:27660400-27675600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:27660400-27680200	Weak transcription	Fetal Kidney	kidney
50	chr7:27660600-27661000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood

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