Variant report

Variant	rs73293846
Chromosome Location	chr7:27751482-27751483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59094104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284457	1.00[AFR][1000 genomes]
rs73287109	1.00[AFR][1000 genomes]
rs73291816	1.00[AFR][1000 genomes]
rs73293827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73293896	1.00[AMR][1000 genomes]
rs73295568	1.00[AMR][1000 genomes]
rs73295581	1.00[AMR][1000 genomes]
rs73295584	1.00[AMR][1000 genomes]
rs73295585	1.00[AMR][1000 genomes]
rs73295601	1.00[AMR][1000 genomes]
rs73297519	1.00[AMR][1000 genomes]
rs73297525	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27749400-27755000	Weak transcription	Small Intestine	intestine
2	chr7:27749600-27754400	Weak transcription	HMEC	breast
3	chr7:27749800-27754400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:27750000-27753800	Weak transcription	HUVEC	blood vessel
5	chr7:27750000-27754200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:27750000-27754200	Weak transcription	NH-A	brain
7	chr7:27750000-27754400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr7:27750200-27752600	Weak transcription	K562	blood
9	chr7:27750200-27753800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr7:27750200-27753800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:27750200-27754000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:27751200-27756800	Enhancers	HepG2	liver
13	chr7:27751400-27755600	Enhancers	Fetal Intestine Large	intestine
14	chr7:27751400-27756400	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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