Variant report

Variant	rs73286798
Chromosome Location	chr14:67903093-67903094
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:67898417..67901273-chr14:67903029..67904787,2	K562	blood:
2	chr14:67902815..67903723-chr14:67913653..67914607,2	MCF-7	breast:
3	chr14:67898493..67900065-chr14:67902969..67905934,2	MCF-7	breast:
4	chr14:67899751..67904520-chr14:67905212..67909411,5	MCF-7	breast:
5	chr14:67902688..67903597-chr14:67993100..67993768,2	MCF-7	breast:
6	chr14:67902911..67909562-chr14:67998675..68002742,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054690	Chromatin interaction
ENSG00000265993	Chromatin interaction
ENSG00000198133	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61377587	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv456331	chr14:67732861-68103780	Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv564961	chr14:67732861-68103780	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	nsv470651	chr14:67732861-68113293	Active TSS Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1054389	chr14:67804987-67922598	Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv542121	chr14:67804987-67922598	Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv1319	chr14:67863561-67908725	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	12 gene(s)	inside rSNPs	diseases
8	nsv902066	chr14:67873128-68103780	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67892800-67909000	Weak transcription	Right Atrium	heart
2	chr14:67894600-67903800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:67895800-67907000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:67896200-67905800	Weak transcription	Fetal Intestine Large	intestine
5	chr14:67898600-67919800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:67899200-67909200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:67899600-67907400	Weak transcription	Left Ventricle	heart
8	chr14:67902000-67903200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr14:67902200-67903200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:67902200-67903600	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr14:67902400-67903200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:67902400-67903200	Enhancers	Brain Angular Gyrus	brain
13	chr14:67902400-67903200	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:67902400-67903200	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr14:67902400-67903200	Enhancers	Colon Smooth Muscle	Colon
16	chr14:67902400-67903200	Enhancers	Psoas Muscle	Psoas
17	chr14:67902400-67903400	Enhancers	Brain Anterior Caudate	brain
18	chr14:67902400-67903400	Enhancers	Brain Hippocampus Middle	brain
19	chr14:67902400-67903400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:67902400-67903600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:67902400-67903600	Enhancers	Pancreas	Pancrea
22	chr14:67902400-67905200	Enhancers	Brain Substantia Nigra	brain
23	chr14:67902400-67905200	Enhancers	Duodenum Mucosa	Duodenum
24	chr14:67902800-67903200	Enhancers	Adipose Nuclei	Adipose
25	chr14:67902800-67903600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr14:67902800-67903600	Enhancers	Stomach Mucosa	stomach
27	chr14:67902800-67905000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:67903000-67903400	Enhancers	HepG2	liver
29	chr14:67903000-67903400	Enhancers	K562	blood
30	chr14:67903000-67903600	Bivalent Enhancer	Placenta	Placenta

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